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[ Source: augustus  ]

Links for augustus

Ubuntu Resources:

• Bug Reports
• Ubuntu Changelog
• Copyright File

Download Source Package augustus:

• [augustus_3.5.0+dfsg-4build5.dsc]
• [augustus_3.5.0+dfsg.orig.tar.xz]
• [augustus_3.5.0+dfsg-4build5.debian.tar.xz]

Maintainer:

• Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

• Debian Med Packaging Team (Mail Archive)
• Sascha Steinbiss

It should generally not be necessary for users to contact the original maintainer.

External Resources:

• Homepage [bioinf.uni-greifswald.de]

Similar packages:

• r-cran-pec
• r-bioc-titancna
• transtermhp
• trnascan-se
• genomethreader
• toppred
• trnascan-se-common
• barrnap
• psortb
• voacapl
• ncoils

Other Packages Related to augustus

depends

recommends

suggests

enhances

• dep: augustus-data

  data files for AUGUSTUS

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams Library

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries

• dep: libcolamd3 (>= 1:7.0.1)

  column approximate minimum degree ordering library for sparse matrices

• dep: libgcc-s1 (>= 3.3.1) [amd64, s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armhf]

  dep: libgcc-s1 (>= 4.2) [ppc64el]

  dep: libgcc-s1 (>= 4.5) [arm64, riscv64]

• dep: libgsl27 (>= 2.7.1)

  GNU Scientific Library (GSL) -- library package

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libmysql++3t64

  MySQL C++ library bindings (runtime)

• dep: libmysqlclient21 (>= 8.0.11)

  MySQL database client library

• dep: libsqlite3-0 (>= 3.5.9)

  SQLite 3 shared library

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• sug: cdbfasta

  Constant DataBase indexing and retrieval tools for multi-FASTA files

• sug: diamond-aligner

  accelerated BLAST compatible local sequence aligner

• sug: libdbd-mysql-perl

  Perl5 database interface to the MariaDB/MySQL database

• sug: libfile-which-perl

  Perl module for searching paths for executable programs

• sug: libparallel-forkmanager-perl

  simple parallel processing fork manager for Perl

• sug: libyaml-perl

  YAML Ain't Markup Language

• sug: python3-biopython

  Python3 library for bioinformatics

Download augustus

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	1,701.1 kB	6,239.0 kB	[list of files]
arm64	1,609.3 kB	6,181.0 kB	[list of files]
armhf	1,940.9 kB	7,461.0 kB	[list of files]
ppc64el	1,906.8 kB	7,974.0 kB	[list of files]
riscv64	2,281.0 kB	9,498.0 kB	[list of files]
s390x	1,810.2 kB	6,585.0 kB	[list of files]