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[ Source: bcbio  ]

Links for bcbio

Ubuntu Resources:

• Bug Reports
• Ubuntu Changelog
• Copyright File

Download Source Package bcbio:

• [bcbio_1.2.9-4.dsc]
• [bcbio_1.2.9.orig.tar.gz]
• [bcbio_1.2.9-4.debian.tar.xz]

Maintainer:

• Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

• Debian Med Packaging Team (Mail Archive)
• Steffen Moeller

It should generally not be necessary for users to contact the original maintainer.

External Resources:

• Homepage [github.com]

Similar packages:

• libhts3
• libhts3t64
• libhtsjdk-java
• r-bioc-htsfilter
• r-bioc-shortread
• golang-github-biogo-hts-dev
• cutadapt
• berkeley-express
• python3-cutadapt
• python3-biotools
• python3-htseq

Other Packages Related to bcbio

depends

recommends

suggests

enhances

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-bcbio

  library for analysing high-throughput sequencing data

• rec: bcftools

  genomic variant calling and manipulation of VCF/BCF files

• rec: bwa

  Burrows-Wheeler Aligner

• rec: cnvkit

  Copy number variant detection from targeted DNA sequencing

• rec: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

• rec: delly

  Structural variant discovery by read analysis

• rec: fastqc

  quality control for high throughput sequence data

• rec: freebayes

  Bayesian haplotype-based polymorphism discovery and genotyping

• rec: grabix

  wee tool for random access into BGZF files

• rec: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• rec: libvcflib-tools

  C++ library for parsing and manipulating VCF files (tools)

• rec: macs

  Model-based Analysis of ChIP-Seq on short reads sequencers

• rec: pythonpy

  'python -c', with tab completion and shorthand

• rec: rna-star

  ultrafast universal RNA-seq aligner

• rec: salmon

  wicked-fast transcript quantification from RNA-seq data

• rec: sambamba

  tools for working with SAM/BAM data

• rec: samblaster

  marks duplicates, extracts discordant/split reads

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: stringtie

  assemble short RNAseq reads to transcripts

• rec: subread

  toolkit for processing next-gen sequencing data

• rec: tabix

  generic indexer for TAB-delimited genome position files

• rec: umis

  tools for processing UMI RNA-tag data

• rec: varscan

  variant detection in next-generation sequencing data

• rec: wget

  retrieves files from the web

• rec: wham-align

  Wisconsin's High-Throughput Alignment Method

• sug: cwltool

  Common Workflow Language reference implementation

• sug: kallisto

  near-optimal RNA-Seq quantification

• sug: libglu1-mesa

  Mesa OpenGL utility library (GLU)

• sug: qualimap

  Package not available

• sug: r-bioc-summarizedexperiment

  BioConductor assay container

• sug: r-cran-tidyverse

  Easily Install and Load the 'Tidyverse'

• sug: r-other-wasabi

  prepare Sailfish and Salmon output for downstream analysis using GNU R

• sug: toil

  cross-platform workflow engine

• sug: tophat-recondition

  post-processor for TopHat unmapped reads

• sug: tophat2

  Package not available

Download bcbio

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	39.9 kB	247.0 kB	[list of files]